This collection of papers reveals a field increasingly focused on the interplay between statistical guarantees and practical performance, with particular attention to how theoretical structure, whether causal, geometric, or algorithmic, can be leveraged to improve inference under realistic constraints. A dominant theme is the decoupling and independent evaluation of components previously bundled together: survival analysis work isolates loss functions from architectures across modalities to show that proper scoring rules reveal which component drives performance; active learning and conformal prediction separately characterize the geometry of selection policies and manifold structure rather than treating them as monolithic design choices. Across multiple domains, from variational inference to SGD to primal-dual control, authors are constructing fine-grained analyses of when acceleration, adaptation, or equivariance actually deliver gains versus when they introduce instability or fail silently, often through sensitivity analysis or worst-case construction. A secondary current runs through identifiability and representation learning, where papers establish conditions under which latent structure can be recovered without relearning it: equivariant architectures bake symmetry into convolutions to avoid wasting training data, diffusion models serve as learned priors to guide posterior inference, and causal discovery methods extend identifiability guarantees from complete to missing-data regimes. Throughout, the methodological standard is empirical validation on heterogeneous benchmarks, tabular and image data, synthetic and real, small and large, paired with explicit characterization of when and why methods succeed or degrade, rather than reporting leaderboard position alone. This reflects maturation toward diagnostics over metrics.
Cole Brennan
Showing of papers
Often, \emph{eg} in healthcare and predictive maintenance, what matters is which of several competing causes will strike first, and with what probability: survival analysis with competing risks. Corresponding deep learning methods are developed as bundles: a new architecture together with a new training loss, tested on one to five datasets against a handful of baselines. Thus, a state-of-the-art result cannot be attributed to the architecture, the loss, or the evaluation protocol. The coupling is not accidental: with one incidence curve per cause, a network's head is tied to the losses expressible on it. We vary the two axes independently, three losses, two of them strictly proper, on four backbones, across two modalities that tease the axes apart: 20 tabular and 3 pathology-image datasets. One loss wins in both: modelling cumulative incidence directly under censoring weighting. It brings twice as much as benefits a good choice of backbone on competing-risks data, and no more than it on single-event data: the loss is decisive for competing risks. The backbone matters too, and must match the modality: tabular networks lead on tables, pretrained vision encoders on images. The two choices compound rather than substitute. Proper scoring rules reveal these dynamics; the concordance index (C-index), which is not proper, does not separate models: neither axis moves it, not even tuning on the loss built to improve it. This is an avenue of progress: composed, the two give a model nobody has tried, RealMLP or TabM trained with the cumulative-incidence loss, which takes the best Brier score in our benchmark.
We consider the problem of online linear classification, where a stream of unlabeled samples is available, and annotation is costly. We investigate the optimal query policy, that prescribes whether and when a sample should be labeled and used for a training step, or instead discarded, so as to minimize a given objective. We focus on the realizable case, under Gaussian design, in the high-dimensional regime where data dimension and number of unlabeled samples grow proportionally. We consider two objectives: 1) the generalization error under a labeling budget, and 2) a cumulative cost function where mistakes have unit cost and queries cost $Δ$. We first show that the myopic policies that greedily minimize at all times the increment in the objective correspond to either small or intermediate-margin policies, that prescribe the selection of samples whose margins fall within certain intervals that shrink with time. Within this class, we numerically ascertain the optimal schedules for the selection thresholds that minimize the final values of the objectives. Taking inspiration from the myopic policy for the cumulative cost, we design a very simple query policy schedule that we compare to other proposed heuristics, on synthetic data and real medical image datasets. Finally, we discuss myopic policies for two-layer neural networks, and exemplify how naive margin-based policies can cease to be optimal.
We introduce a conformal prediction framework for regression with Grassmann-valued responses. The proposed method constructs prediction regions in the form of metric balls directly on the Grassmann manifold, using basis-invariant geometric distances as non-conformity measures and scaling the corresponding non-conformity scores through a learned prediction difficulty estimator. This yields locally adaptive, input-dependent prediction regions that respect the underlying manifold geometry, while retaining the finite-sample marginal coverage guarantee of split conformal prediction under exchangeability. We evaluate several Grassmannian distance metrics and compare their prediction-region efficiency on synthetic benchmarks and an airfoil inverse shape-design problem. The results highlight the advantages of geometry-aware non-conformity scores, while local adaptation improves empirical coverage uniformity across prediction difficulty levels and, in strongly heteroscedastic settings, can substantially reduce prediction-region size while maintaining the target coverage.
Most convergence guarantees for iterative stochastic algorithms are stated at a fixed iteration count and do not justify stopping at a data-dependent time. Recent work has constructed anytime-valid envelopes that do, but deterministic envelopes are typically too conservative for practical stopping, and existing data-adaptive ones are derived case-by-case, each coupling a specific algorithm to a specific noise model and boundary construction. This paper provides a general recipe for constructing such anytime-valid data-adaptive boundaries for a large class of iterative algorithms. Performance measures of many of these algorithms satisfy a one-step recursion that reduces the entire error analysis to a single general requirement: time-uniform concentration for predictably weighted sums of noise. We formalize this through a strongly adapted sub-$ψ$ condition, and derive off-the-shelf boundary constructions via continuous and discrete mixtures, stitching, and product betting martingales. We show how these boundaries can be directly coupled with a separate algorithmic analysis that derives the one-step recursion to provide a class of readymade anytime-valid envelopes across diverse settings including stochastic gradient descent (SGD), temporal difference learning, and Bures-Wasserstein SGD. In particular, for SGD, our framework either recovers or significantly sharpens every existing envelope we are aware of. Our constructions come with explicit implementation details and are substantiated by numerical experiments.
Understanding how stochastic gradient descent learns internal representations in wide neural networks trained on rich target functions is a central problem in machine learning. We study this question in two-layer neural networks learning target functions represented by networks of the same architecture, with arbitrary nonlinearity, and with network width and input dimension growing proportionally. In this regime, standard approaches for describing the learning dynamics require tracking a diverging number of overlaps, which measure correlations between learned and target features, leaving no obvious description in terms of a few order parameters. Here, we develop a mesoscopic description of learning by characterizing the distribution of overlaps. In the early stages of learning, we find that a Gaussian description of overlap statistics reduces the learning dynamics to a few collective variables that track learning of the target function's linear and quadratic components. We then estimate the timescale of specialization, when Gaussian closure breaks down and individual learned features begin to strongly correlate with specific target features. We find that specialization in extensive-rank networks is accelerated via a quadratic shielding mechanism, whereby learning the linear and quadratic components of the target function filters gradient fluctuations. We finally describe how the activation function determines the pattern of specialization and characterize the subsequent refinement of learned features. Together, these results show how collective learning gives way to individual feature discovery and clarify when learning in large neural networks admits a simple statistical description.
Primal-dual methods for constrained Markov decision processes are analyzed under a two-timescale assumption, with non-stationarity entering through two channels. In the additive channel, where the constraint level oscillates, the dual oscillation saturates at a floor set by the moving optimum and is amplified linearly by the timescale ratio. In the parametric channel, where the constraint sensitivity oscillates, a coherent modulation carries no resonant forcing at any depth: the dual update's stiffness modulation cancels the primal update's damping modulation. Instability instead comes from a mismatch between the constraint estimate used by the primal update and the measurement used by the dual update, producing a parametric resonance at twice the pair's natural frequency. The tolerated mismatch grows with the square root of the forcing bandwidth and collapses with the square root of the dual-to-primal step-size ratio. These results hold on the tangent linear-quadratic reduction around an active saddle, for one constraint and for $K$ constraints under a common modulation and an isotropy condition. Driving both updates from the same estimate removes the resonant forcing but introduces a stationary offset equal to the estimator's bias. In a Lagrangian soft actor-critic agent, the multiplier locks onto the sub-harmonic at the timescale ratios its identified linear loop predicts and a coherent cost critic suppresses the lock-in, while a proportional (PID) term, predicted to leave the lock-in in place, suppresses most of it through the projection of the multiplier.
Rènyi differential privacy, based on Rènyi divergence, has become a notion of choice for privacy guarantees. However, outside the Gaussian setting, Rènyi divergence can be difficult to compute. In particular, Rènyi differential privacy guarantees that exploit task-specific information, as in Rènyi Pufferfish privacy, can be challenging. Here we use kernel Stein discrepancies based on escort distributions to provide certificates for Rènyi differential privacy. By designing the kernel to focus on the relevant privacy directions, we also derive task-aware privacy certificates. We provide exact identities for Gaussian and Laplace mechanisms and bounds for exponential mechanisms, with separate task-aware guarantees. A real data set example illustrates how the protected comparison set and the released subspace jointly determine the resulting certificates.
Many of the most important datasets in the physical sciences live natively on the sphere, and these data often carry no preferred position or orientation. Using methods that do not reflect this symmetry leads to far higher simulation requirements, which can be catastrophic for scientific analyses (forcing reliance on cheap, imperfect models that bias results). We present a novel spherical implementation of a gauge equivariant mesh architecture that is specifically designed for the Hierarchical Equal Area isoLatitude Pixelization (\healpix{}) of the sphere. The $\mathrm{SO}(3)$-equivariant convolution is built from steerable filters, parallel transport and spin-weighted features. The architecture supplies the exact symmetry, so the network does not spend training data learning it. The convolution operations are constructed to give provably exact equivariance, given a band-limit. Our full CNNs can achieve SO(3)-invariance error at per-cent-level and lower, which is controlled through well-understood hyperparameters. On benchmarks, our technique gives the most accurate dense gradient regression and competitive cosmic microwave background foreground removal and denoising. The improved simulation efficiency matters most in simulation-based inference (SBI), where high-fidelity simulations are expensive and neural compressors require large training sets, so a fixed budget forces analyses with less accurate simulators. In cosmology lensing SBI, our technique yields the tightest posteriors at matched simulation count. This approach is a novel method that will enable new convolutional neural network analyses, including generative and inference tasks, for processes and data on the sphere.
The evidence, $\mathcal{Z} = p(x | \mathcal{M})$, of a data-generating model $\mathcal{M}$ is a powerful tool in Bayesian frameworks: it enables model inference, model misspecification tests, and goodness-of-fit assessment as an alternative to standard discrepancy statistics, e.g. $χ^2$. While versatile, the evidence is notoriously difficult to compute, even when the likelihood is available. In both likelihood-based and simulation-based inference, estimating $\mathcal{Z}$ provides an immediate solution to high-dimensional goodness-of-fit or model misspecification tests: using $\mathcal{Z}(x)$ as the test statistic induces a minimum-volume level-$α$ test. Such tests are essential to assess model fidelity, which is necessary to trust simulation-based parameter inference. Existing learned approaches largely target Bayes factors, which only measure evidence ratios. Instead, we provide accurate, fast, and amortized estimates of the absolute evidence. We present ENFR: Evidence Networks with Flow-matched References. Building on the Evidence Network framework of Jeffrey & Wandelt (2024), the proposed method first learns Bayes factors with respect to a flow-matched reference, from which the absolute evidence is recovered. We show improvement in estimation of $\mathcal{Z}$ over the flow-based baseline in all applications considered and the best performance of all density estimation methods considered in our benchmarks. We furthermore introduce and provide the proof for an architecture that jointly learns the individual evidences of a set of models $\{\mathcal{M}_i\}$. We demonstrate the performance and scaling behavior of these approaches on data from a variety of scientific applications.
Understanding when neural networks learn interpretable representations is central to mechanistic interpretability. We study this through identifiability: when can supervised learning recover the true latent variables underlying the data? We introduce two data generating processes distinguished by their causal direction where either labels cause latents (generative) or latents cause labels (discriminative). When the representation has at least as many dimensions as the latent space, we prove that the optimal encoders are linear in the latents. Conversely, when dimensions are insufficient, identifiability generically fails and encoders become nonlinear. We then show that additional constraints yield recovery of individual latent variables, not just linear mixtures. In the generative setting, non-negative activations and energy efficiency force each neuron to encode exactly one latent, providing a precise account of selective grandmother cell-like responses. In the discriminative setting, when latents are sparse and the true measurement matrix satisfies the spark condition, the learned encoder inherits compressed sensing structure, enabling sparse dictionary learning to perfectly recover individual latents. This constitutes, to our knowledge, the first identifiability result for undercomplete nonlinear independent component analysis. Our framework unifies nonlinear ICA, compressed sensing, and neural network interpretability, delineating exactly when representations transition from nonlinear distortions to linear representations and, under additional constraints or steps, to clean, axis-aligned codes. Theoretical predictions are validated on synthetic benchmarks and on activations drawn from vision models, large language models, and macaque inferotemporal cortex.
We propose the Time-partitioning Gaussian Process Mixture Model (TPGPMM), a Bayesian nonparametric framework for identifying persistent regimes and modelling nonstationary dependence in time series. The model combines an adaptive Pitman--Yor prior on contiguous segmentations with regime-specific Gaussian processes, without imposing Markovian within-regime dependence. Learning the Pitman--Yor discount parameter allows adaptation to homogeneous and heterogeneous regime lengths. A split--merge Metropolis-within-Gibbs sampler with exact Gibbs boundary updates jointly learns change points and model hyperparameters, quantifying uncertainty over segmentations and within-regime dynamics. With an RBF kernel and a fixed, conservative observation-noise level, TPGPMM favours sparse segmentations that distinguish persistent shifts from transient shocks. Simulations demonstrate recovery of the regime structure. Applications to the CBOE Volatility Index (VIX) and the 10-year United States Treasury yield identify regimes aligned with major market and monetary-policy events. Variants that estimate observation noise improve predictive accuracy relative to the main specification, but can produce less sparse or less event-aligned segmentations. A variant with regime-specific means fits better than a fitted stationary Gaussian process and forecasts about as accurately. These results highlight a trade-off between interpretable regime identification and predictive accuracy.
Estimating causal effects on right-censored time-to-event outcomes is challenging under unmeasured confounding. Proximal causal inference addresses unmeasured confounding through proxy variables, but existing proximal survival methods rely largely on restrictive parametric bridge models. We introduce Proximal Survival Bridge learning (PSB), a flexible doubly robust proximal framework for censored outcomes. Building on existing proximal identification of treatment-specific survival curves, the framework yields outcome-bridge (OB), treatment-bridge (TB), and doubly robust (DR) estimators, with two flexible bridge learners: PSB-K, a kernel estimator with a low-rank time decomposition, and PSB-N, a neural estimator trained by a projected maximum-moment-restriction loss. Unlike existing flexible proximal learners for scalar outcomes, PSB directly handles censoring and survival-curve targets. On a standard SEM benchmark, a proximal semi-synthetic ACTG study, and the real-world Framingham study, PSB-K performs strongest on SEM and ACTG, whereas PSB-N is the most stable on Framingham. Additional results with modern causal survival baselines, weakened or invalid proxies, and heavier censoring assess robustness across challenging settings.
This paper investigates the statistical behavior of Stochastic Gradient Descent (SGD) with constant step size under the framework of iterated random functions. Compared to previous studies establishing the convergence of SGD in probability measure, e.g., Wasserstein distance, our approach directly provides the convergence in Euclidean distance by showing the Geometric Moment Contraction (GMC) of SGD. This new convergence can address the non-stationarity of SGD due to fixed initial points and can provide a more refined asymptotic analysis of SGD. Specifically, we prove quenched central limit theorem, invariance principle and $α$-stable convergence for averaged SGD (ASGD) regardless of initialization. Furthermore, we provide a novel perspective to understand the impact of step sizes in SGD by studying its derivative with respect to the step size. The existence of stationary solutions for the derivative processes is shown, enabling the use of interpolation to recover the full-trajectory of SGD. Subsequently, we utilize multiple step sizes and show an enhanced Richardson-Romberg extrapolation with improved bias representation, which brings ASGD estimates closer to the global optimum. Finally, we propose a new online inference method and a bias-reduced variant for the extrapolated ASGD. Empirical confidence intervals are constructed and the coverage probabilities approach the nominal level as $n$ grows.
Deep learning models, particularly Long Short-Term Memory networks, are increasingly used for operational streamflow forecasting, with ensemble spread providing a signal of predictive uncertainty. As climate change increases the frequency of hydroclimatic extremes, these models will increasingly operate under flow conditions that are rare in their historical records. We therefore evaluate whether ensemble spread remains informative under increasing flows, examining both its magnitude relative to error and its ability to rank errors. Prediction error is approximately $2\times$ the corrected spread at ordinary flows and up to $4\times$ at the highest flows, with the discrepancy increasing with flow (log-log slope $1.30$, 95% CI: $[1.20,1.41]$). Under-dispersion is strongest in observed extreme flows beyond the training record, reaching an $18\times$ discrepancy. This is pervasive and not explainable by conditional mean bias. Area Under the Sparsification Error, a standard distribution-free metric of uncertainty ranking, describing how well a model knows when it is uncertain, indicates near-oracle ranking for ensemble spread ($0.071$), yet ordering by predicted discharge alone nearly matches it. Informative uncertainty ranking can coexist with severe under-dispersion. In deployment, error ranking cannot be verified, yet the spread is available, and it is relied on as the uncertainty signal under increasingly extreme conditions, while systematically understating risk, most severely for the extreme events that matter most.
Generative modeling across related distributions raises a question: how can shared structure support accurate generation for a target distribution with limited observations? We develop a statistical framework for diffusion transfer that analyzes a shared pooled score together with a target-specific offset. Under Besov regularity of the pooled density and a stable hierarchical composition model for the offset, we derive convergence rates that separate the costs of learning these components and identify when a simpler offset yields a faster risk-bound rate than separate fitting. Under suitable boundary and regularity assumptions, we prove that the offset remains bounded and jointly regular as diffusion time approaches zero. These results allow the lower time cutoff to vanish polynomially and provide total-variation guarantees for diffusion models as density estimators. Synthetic simulations and image benchmarks provide a proof of concept for the framework.
We study whether the classical momentum-based acceleration that improves the condition-number dependence of gradient descent from $κ$ to $\sqrtκ$ for strongly convex, smooth objectives extends to Gaussian variational inference (GVI) for strongly log-concave, log-smooth target distributions. With exact Gaussian expectations, a convex composite formulation of GVI yields the classical accelerated $\sqrtκ$ convergence rate. However, when only pointwise derivatives are available, we construct a family of strongly log-concave targets for which any randomized algorithm requires $κ^{1-o(1)}$ queries to achieve a fixed objective accuracy, even when the initial objective gap is bounded independently of $κ$. Thus curvature bounds alone cannot guarantee uniform accelerated total-query complexity. We then ask which additional structure permits acceleration and give positive examples: under a Hessian-Lipschitz assumption, variance-reduced stochastic methods yield accelerated guarantees when the Hessian variation is sufficiently small. Finally, experiments on real datasets show substantial empirical speedups from acceleration across a broad range of methods.
We propose a general framework for non-interactive locally differentially private (LDP) learning of structured univariate distributions that can be approximated by piece-wise polynomials. This gives the first sample-efficient LDP learners for several distribution classes, including mixtures of log-concave distributions, such as Gaussian mixture models (GMMs). These learners also provide agnostic guarantees and are computationally efficient. We also prove a lower bound for learning GMMs under LDP, improving on the standard pure-DP packing lower bounds of Bun et al. [BKSW19]. To obtain our general learning framework, we develop an efficient non-interactive LDP algorithm for synthetic data generation over large domains, which may be of independent interest. We then use it together with a deterministic adaptation of the non-private piecewise polynomial learner of Acharya et al. [ADLS17].
Discrete diffusion models have become a powerful framework for modeling complex discrete distributions across a range of applications. While theoretical convergence guarantees depend on consistency between the target and training distributions, such a case rarely holds in practice, making score mismatch a central challenge in discrete diffusion sampling. This is particularly relevant to zero-shot conditional generation, where a model trained on the unconditional distribution is directly reused at inference time to sample from a conditional target distribution. In this paper, we provide the first theoretical analysis for score-mismatched discrete diffusion models and derive a general KL divergence upper bound that clearly identifies the additional bias caused by such a mismatch. Our analysis covers partial-observation constraints, including text infilling, sentence completion, and more general coordinatewise set constraints. Specifically, we analyze the classical Conditional SEDD sampler and show that it can incur a bias term that scales with the dimension, vocabulary size, and compatibility. Based on this analysis, we propose a Randomized Hard Clamping (RHC) sampler for coordinatewise set constraints. We show that the assignment probabilities can be expressed exactly by the unconditional scores with absorbing rate. Finally, numerical and real-data experiments demonstrate the effectiveness of the proposed RHC sampler.
Classical PAC-Bayesian generalization theory places prior distributions over Euclidean parameter space $Θ\subseteq \mathbb{R}^D$, causing relative entropy to scale with network dimension $D$. For modern overparameterized neural networks where $D \gg n$, this parameter-counting dependency yields vacuous generalization bounds ($> 1{,}000\%$). In this work, we resolve this barrier by shifting prior specification from internal parameters to the non-parametric space of data distributions $\mathcal{M}_1(\mathcal{Z})$ via a \textbf{Dirichlet Process (DP)}, $\mathcal{DP}(α, F_0)$, inducing parameter distributions through push-forward measures under the learning algorithm. By the Data Processing Inequality, parameter-space relative entropy is strictly bounded by the data-space DP divergence, which we evaluate in exact closed form using Digamma functions. The resulting PAC-Bayesian certificate is strictly invariant to network parameter count $D$, width, and depth. On intrinsic $d^*$-dimensional submanifolds, optimal partition scaling achieves the minimax non-parametric rate $\mathcal{O}(n^{-1/(d^*+2)} \sqrt{\ln n})$. Across vision architectures scaling up to 4.2 million parameters ($D = 7{,}850$ to $D = 4{,}203{,}522$) on the full MNIST benchmark, while classical weight-space bounds scale past $940\%$ (becoming vacuous), our data-space DP-PAC-Bayes certificate remains stable, non-vacuous, and certified at \textbf{$8.8\%$--$9.4\%$}.
Muon replaces a matrix gradient by an approximate polar factor and has shown strong empirical performance in neural-network training. The Isotropic Curvature Model (ICM) provides a curvature-based explanation for this update by asking when gradient orthogonalization minimizes a one-step local-loss surrogate. We investigate the stability of this explanation when the fixed input radius of the ICM is replaced by a general radial law. We introduce the Random-Radius Isotropic Curvature Model (RR-ICM) and the Polar-Factor Admissibility Set, which encodes exact scaled-polar optimality as a geometric condition on the positive polar factor of the gradient. We derive an exact characterization of this set for arbitrary radial laws and show that all nonscalar admissible responses arise from radial atoms aligned with curvature kinks. Consequently, every atomless radial law exhibits zero-capacity rigidity: exact scaled-polar optimality is possible only when the gradient is already a scaled column isometry. To connect the curvature-based framework with the established spectral geometry of Muon, we introduce the Minimax RR-ICM by replacing directional averaging with worst-case optimization over probability laws on the sphere. We prove that every nonzero global minimizer lies on the polar ray of the gradient, while its scale is determined by a one-dimensional convex problem. The corresponding admissibility geometry is a positive-semidefinite trace slab, in sharp contrast to the spherical-zonoid geometry of the RR-ICM. Together, these results expose the radial fragility of average-curvature explanations and provide a new minimax variational characterization of Muon's polar direction.
Flow matching has emerged as a powerful generative family for simulation-based inference (SBI). However, sampling and density evaluation require numerical integration at inference time. This makes posterior sampling in neural posterior estimation costly. More importantly, it can make repeated likelihood evaluation prohibitively expensive and impractical for Markov chain Monte Carlo (MCMC) sampling, which may require thousands of repeated density evaluations. Here, we develop conditional mean flows for posterior and likelihood approximation, combining few-step sampling with tractable density evaluation. We show that the mean flow objective identifies conditional flow maps and that independent masking enables direct estimation of marginal likelihoods. We evaluate both posterior and likelihood estimation across several tasks and show that conditional mean flows retain the flexibility of flow-based density estimators while significantly reducing inference time. In particular, single-step conditional mean flow density evaluation yields estimation error comparable to 200-step flow matching while enabling about 200-fold faster downstream MCMC sampling.
Robust covariance estimation under entry-wise contamination and missing data is challenging in various signal processing applications. Under the Student-$t$ model, observation-level reweighting induces a uniform attenuation across samples, which can lead to cumulative information loss even when most coordinates remain informative. The alternative Student-$t^*$ model enables coordinate-wise robustness, but its E-step is not available in closed form. We extend inference for the Student-$t^*$ model to incomplete observations through a stochastic approximation EM (SAEM) algorithm operating on a reduced latent space: stochastic updates of the coordinate-wise scales are combined with Rao-Blackwellized Gaussian conditional moments, which avoids explicit sampling of latent Gaussian variables while preserving a likelihood-based framework. Experiments on synthetic and real sensor data show a lower Fisher-Rao error than Gaussian, Student-$t$, imputation-based and detect-then-estimate estimators at moderate to high outlier rates under diffuse contamination.
Tabular foundation models based on prior-data fitted networks (PFNs) predict on a new data set in a single forward pass, but they cannot report which inputs their predictions depend on. We propose SelectPFN, a PFN that performs Bayesian variable selection and prediction jointly for sparse nonlinear regression. In one forward pass it returns posterior inclusion probabilities for every variable, and its predictions are computed from sampled subsets only, so excluded variables provably cannot affect them; we show this is exactly what the Bayesian model prescribes. The network is pretrained once on synthetic tasks from a meta-prior built around a group spike-and-slab sparse-input neural network. Column-permutation equivariance combined with random interleaving of original and knockoff columns yields knockoff statistics with exact finite-sample false discovery rate control, even when the meta-prior is wrong. We develop theory for amortized selection: a Bayes-regret bound for the amortized median probability model, a characterization showing that the information needed to detect a variable grows like $(2/λ)\log(1/ω)$ in the prior weight $ω$ of structures that can use it, where $λ\le1$ is an efficiency, and a negative result showing that average-case training does not transfer to frequentist guarantees at a fixed truth. On out-of-prior nonlinear designs with p up to 500, SelectPFN improves the area under the precision-recall curve by 0.23-0.28 over the lasso, BART, DART, LassoNet and a group-penalized sparse neural network, at a false discovery proportion of about 0.07 and 0.04 seconds per data set. The advantage persists on real covariate matrices, and, as the theory predicts, detection of interaction-only variables rises monotonically with their prior weight.
Standard Bayesian experimental design (BED) methods assume the experimenter alone will act on the data, choosing the best action given their own beliefs and goals. In practice, data are often acted on by external parties whose procedures the experimenter cannot change and may not know, particularly when the data are released publicly. To extend BED to such settings, we introduce usage-aware experimental design, a framework in which an adaptive design policy is trained to minimise the usage risk: the experimenter's expected loss when one or more external rules act on the collected data. These rules may be non-Bayesian or black-box, and when several may apply, we either average over them or take the worst case. We show that, unlike in standard BED, more informative data can be harmful under such rules, so the usage risk cannot in general be expressed as an expected uncertainty reduction; our framework thus strictly generalises standard BED. We then use it to tackle a range of problems that are difficult to address with existing approaches.
In the best-arm identification problem, an algorithm adaptively selects arms to find the arm of the largest mean reward. Successive Rejects (SR) is a simple fixed-budget best-arm identification algorithm that eliminates one candidate arm at each phase. At first glance, SR seems to have limited adaptivity, since it follows predetermined phase lengths. However, for Gaussian arms with common variance, SR's worst-instance error exponent normalized by the popular complexity measure $H_1(P)$ is optimal up to a constant factor, which partly explains why SR's performance is competitive compared with state-of-the-art adaptive sampling algorithms. In this paper, we extend the framework of SR by optimizing its predefined schedule of phase lengths. We formulate phase-schedule design as an optimization problem for the normalized error exponent. Then, we introduce a version of SR with the optimized schedule, which we call $H_1$-balanced Successive Rejects ($H_1$-SR). This schedule is optimal within the class of SR-type algorithms with deterministic equal-count schedules. For Gaussian arms with common variance, $H_1$-SR achieves at least $11/12$ of the optimal normalized rate over all adaptive algorithms for every $K\ge2$, and this approximation ratio converges to one as $1-O(1/\log K)$ as $K\to\infty$. This is a significant improvement over original SR, whose corresponding fraction of the optimal normalized rate converges to $1/4$. Finally, experiments on ten synthetic instances and two dataset-derived Gaussian benchmarks compare the optimized schedule with original SR at finite horizons. They show substantial gains on many instances while also exposing a regime in which more aggressive early elimination is costly.
Neural networks offer critical adaptability for controlling complex systems where nominal modeling proves intractable. However, when offline-trained neural networks are deployed within closed-loop control systems, their actions fundamentally alter the state distribution upon which they were trained. This paper introduces a unified taxonomy to categorize these sequential failure modes: the initial Closed-Loop Identification Error, the deployment-induced Action Error, and the continuous Tracking Error. Through discrete-time sensitivity analysis, this work formalizes how offline-learned parameters locally guarantee a trajectory divergence upon deployment, degrading performance due to local loss geometry. To mitigate this distribution shift, we propose actionable design policies centered on time-scale separated online adaptation. These mechanisms are validated through ablation studies on a nonlinear Duffing oscillator, demonstrating that bounded continuous learning successfully mitigates trajectory divergence whereas static deployments fail, offering concrete guidelines for practitioners deploying machine learning components in safety-critical feedback systems.
Tabular foundation models (TFMs) now outperform gradient-boosted trees in classification and regression. Yet in survival analysis, which predicts when an event occurs from censored data, often on small clinical cohorts, we find that no existing TFM beats the half-century-old Cox model. We address this issue by introducing SurvICL, a TFM that predicts survival curves in-context. SurvICL is pretrained on purely synthetic datasets generated from a novel flexible proportional-odds prior that outperforms other prior types in our ablation study. Unlike most other survival models, SurvICL is trained with a plain quantile regression loss, which is possible because its synthetic pre-training data generator can provide uncensored event times. Additionally, we introduce the largest survival benchmark to date spanning 103 datasets. On the 63 datasets held out from all design decisions, SurvICL outperforms 20 tree-based, deep, and foundation-model baselines without any tuning: it wins 82.9\% of pairwise comparisons in integrated Brier score, against 71.3\% for the runner-up, the Cox model, and is the first model to rank above Cox on small datasets.
This paper extends the applicability of probabilistic graphical models to non Gaussian data. It establishes a characterization of the pairwise Markov property in undirected probabilistic graphical models in terms of copula densities. Building on this characterization, we derive a necessary condition for the pairwise Markov property in Student copula Markov networks. An Expectation-Conditional Maximization algorithm (ECM) is provided to facilitate the penalized maximum likelihood estimation and graph selection. The performance of the proposed algorithm is evaluated through simulation studies, which demonstrate its effectiveness in estimating model parameters and recovering the underlying graph structure.
Full waveform inversion (FWI) is a powerful tool for high-resolution subsurface model reconstruction, but it remains highly nonlinear and ill-posed, especially when the initial model is inaccurate or the acquired data are noisy and incomplete. Annealed Stein variational gradient descent (ASVGD) provides a particle-based Bayesian framework for FWI by approximating the posterior distribution with an ensemble of velocity models, thereby enabling uncertainty quantification beyond a single deterministic solution. However, conventional ASVGD-FWI commonly relies on simple handcrafted priors, such as Gaussian or smoothing assumptions, which are often insufficient to represent complex geological structures. To address this limitation, we introduce a learned diffusion model (DM) as an implicit regularization mechanism within the ASVGD-FWI framework. Instead of explicitly evaluating the diffusion prior density, the trained diffusion model acts as a learned geological projection operator that guides updated particles toward the distribution of plausible velocity models. In this way, the proposed method combines data consistency from FWI, posterior diversity from ASVGD, and structural realism from the diffusion prior. Numerical experiments demonstrate that the diffusion-regularized ASVGD-FWI produces more geologically consistent mean models, suppresses nonphysical artifacts, and yields uncertainty estimates that are more concentrated around structurally complex and poorly constrained regions. These results suggest that learned diffusion priors can effectively enhance Bayesian FWI by improving both inversion stability and the interpretability of posterior uncertainty.
While causal discovery methods have matured for complete data, such algorithms for handling missing values remain limited. We establish general sufficient conditions under which causal graphs remain identifiable (i.e., uniquely determined from the available data distribution) under various missingness categories, including Missing Not At Random, and provide a framework to extend correctness guarantees from causal discovery algorithms for complete data to missing data settings. Our results show that identifiability of causal graphs with no unobserved confounders is preserved when (1) missingness mechanisms do not causally interact, (2) no variable directly causes its own missingness, and (3) either faithfulness holds for missingness mechanisms, or they follow generalized linear models. Guided by these theoretical results, we introduce two asymptotically correct algorithms for Additive Noise Models (ANMs) that recover the underlying causal graph and provide consistent parameter estimates.