The Inference Report

October 13, 2026
Research Papers — Focused

Today's research in statistical methodology clusters around three interconnected challenges: inference under realistic data constraints, causal discovery and effect estimation when standard assumptions break, and the integration of machine learning into classical statistical workflows. On the first axis, multiple papers address weak signals, limited samples, and temporal or spatial dependence, whether through prediction-powered inference adapted to autocorrelated time series, external validity frameworks that scale sample size from pilot studies via kernel methods, or policy learning under heteroskedasticity and massive covariate spaces where smoothness assumptions enable minimax-adaptive rates. On causal inference, the pattern is one of relaxing classical restrictions: methods now jointly handle nonlinear confounding, data-driven lag selection with false discovery rate control (ORACLE-VARX), heteroscedastic noise and distributional shape variation in bivariate identification (LRQS), and AI-generated covariates whose causal roles must be locked before analysis to prevent estimand drift. The third axis reflects a pragmatic integration of generative models, normalizing flows, and deep learning into hypothesis testing and uncertainty quantification, whether through likelihood approximation via aggregated flows for simulation-based inference, conformal methods that protect policy decisions without outcome modeling assumptions, or control variable approaches that correct for shortcut learning in neural networks. Across these themes, the methodological signature is shared: authors specify when standard asymptotics hold or fail, quantify finite-sample costs of violations (panel attrition, serial correlation, contamination), and build safeguards, diagnostic batteries, coverage guarantees, role-locking protocols, that are testable rather than assumed.

Cole Brennan

Showing of papers

Kernel-based External Validity of Experimental Studies stat.ME

The external validity of a study is the extent to which its findings generalize to unseen experimental conditions, such as datasets. We formalize the results of a study together with its research question, and define external validity as the probability that two independent and same-sized replications of the study produce results whose maximum mean discrepancy (MMD) is below a given tolerance. This approach, centered on the choice of a space of results and of an appropriate reproducing kernel for the MMD, is flexible enough to be deployed on multiple different types of results and research questions. Additionally, we establish an asymptotic power-law relation between the size of a study and the quantiles of the MMD, which we use to estimate the desired size of an externally valid study from a small-scale preliminary study. We deploy our framework to rankings with ties and discuss kernels suited to different research questions. Experiments on existing case studies and on a simulated newly designed study illustrate the applicability of the framework. We release our code as part of the genexpy Python module.

Policy Learning with Weak Signals stat.ME

Policy learning in digital experimentation faces three challenges: weak signal-to-noise ratios, rich covariate spaces, and massive data volumes. We formalize this regime by modeling treatment-effect estimates from increasingly fine covariate partitions as Gaussian observations with bounded signal-to-noise ratios. We establish that, in general, the optimal treatment policy is not learnable in this setting. Even learning the optimal policy value suffers from impractically slow rates. However, when treatment effects vary smoothly, we derive minimax-adaptive policies based on linear smoothers that achieve vanishing welfare regret. We demonstrate the practical value of our framework by applying it to large-scale real-world experiments at Netflix, showing that personalized linear-smoothing policies can dominate unpersonalized policies even in this challenging empirical setting.

A perspective note on likelihood approximation and inference for complex simulation models using a chain of aggregated normalizing flows stat.ME

We present a new perspective on the problem of likelihood approximation within the framework of simulation-based inference that promotes scalable and controllable simulation routines for large-scale data analysis, allows efficient parameter space exploration or smooth interpolation in high-dimensions and, thus, supports valid statistical treatments of hypothesis testings as well as uncertainty quantification. In particular, we consider a chain of $n$-aggregated normalizing flows for likelihood approximation scheme, where a set of upfront replicated observation datasets from the forward complex simulation model pass through the first set of bijective transformations, and then subsequently pass to the other sets of bijective transformations. Here, we assume that, for any $k \in \{1,\,2, \ldots, n\}$, the parameters corresponding to the first $k$ sets of bijective transformations are estimated sequentially, in some sense of optimality, for constructing flexible probability distributions, regardless of the remaining $(n-k)$ sets of bijective transformations. Moreover, our objects of interest are to highlight two complementary mathematical arguments that leverage an informatics-theoretic formalization, based-on empirical likelihood estimators under moment restrictions, and a sequential decision-making paradigm, with mixing distributions, for updating and aggregating the estimated parameters of the overall normalizing flows. As a by-product, the framework provides a reliable surrogate model, conditioned on the model parameters defining the forward computational simulation, that allows samples generation, with statistical powers, and facilitates computationally tractable scheme in the Bayesian paradigm for inference, hypothesis testings and uncertainty quantification.

Where Do Two Populations of Persistence Diagrams Differ? Calibrated Local Inference at a Fixed Budget stat.ME

Many two-sample tests for populations of persistence diagrams assess global differences without identifying the regions of the birth-death plane that contribute to them. We study simultaneous inference for local mean contrasts when the number of available diagrams is fixed. They are differences in expected weighted feature mass within $\ell_\infty$ neighborhoods at several centers and radii. We estimate these contrasts using additive landmark responses. A Gaussian multiplier bootstrap calibrates simultaneous confidence intervals while allowing unequal group covariances. The neighborhoods whose intervals exclude zero form a map with approximate family-wise error control, and selecting a subset of original intervals for display preserves their joint coverage guarantee. On the simultaneous coverage event, every reported neighborhood lies within twice its radius of the support of the mean-measure difference. A geometric result gives sufficient radius conditions for a displaced feature to produce a nonzero contrast. A comparison of sufficient detection thresholds quantifies the tradeoff between reducing the number of tested coordinates and reserving observations for an independent pilot. In simulations with 40 to 120 diagrams per class, the bands achieved 94%-98% simultaneous coverage under both the strict null and equal means with unequal covariances. In the latter setting, a permutation maximum and the pooled-t implementation of the two-stage persistence-image test of Moon and Lazar rejected in up to 32% and 26% of runs, respectively. In the fixed-budget simulations, spending a third of the observations on a pilot to choose landmarks or radii located changes less often than a prespecified grid at a single radius. On the MUTAG benchmark, the localized region concentrates on rings of fused-ring systems, an exploratory reading.

Prediction-powered inference for time series across space stat.ME

The following motif is common in spatiotemporal settings: we have a sequence of covariate and label pairs observed for a relatively short, recent time period. We have access to unlabeled covariates over a longer time period. Data is observed over many spatial locations. For instance, crop yield might be observed over a large geographical area for recent years, but weather data (which is informative about crop yield) is available for a much longer period. The goal is to estimate, at each spatial location, the expected label (e.g., crop yield) in the future and provide a valid confidence interval for this value. The observed time period alone is too short for reliable estimates. Imputing missing labels with machine learning can cause substantial bias. Prediction-powered inference (PPI) can correct for this bias, but it relies on an i.i.d. assumption that breaks under our expected temporal dependencies. Heteroskedasticity and autocorrelation consistent (HAC) procedures account for temporal correlation, but have not been adapted to cases where some labels are imputed. We provide reliable point estimates and confidence intervals given: short labeled time series (across spatial locations), a longer unlabeled time series, and an imperfect predictor of labels given covariates. We show our method outperforms natural alternatives.

Causal Lag Structure Discovery in Confounded Time Series via Orthogonalized Adaptive Estimation stat.ME

Finding which variables cause which others in multivariate time series, and at what lags, is central to science and policy, yet existing methods force a choice between flexible confounder adjustment, data-driven lag selection, and inference that controls the false discovery rate (FDR). ORACLE-VARX does all three in one pipeline. First, double/debiased machine learning (DML) removes nonlinear confounder effects from the outcomes and the lagged series. Second, adaptive causal lag estimation (ACLE) picks the lag order at each time step by sequential significance tests, tracking regime changes. Third, entry-wise $z$-tests with Benjamini--Hochberg correction select directed edges at a target FDR. We prove that in each rolling window, the debiased coefficients are asymptotically normal around a window-averaged target, so their $z$-tests are asymptotically valid. On a synthetic benchmark with time-varying structure and nonlinear confounding, ORACLE-VARX (LightGBM) tracks the true lag order best (RMSE $0.96$ vs $1.1$--$1.5$), has edge FDR $0.047$, close to PCMCI ($0.045$) and below VAR ($0.129$) and VAR-LiNGAM ($0.187$), and forecasts better than all three. On nine U.S. sector ETFs with macroeconomic confounders, it yields interpretable causal graphs whose lag order rises in high-volatility regimes.

Polylogarithmic Sparsity of Randomly Reweighted NPMLEs for Gaussian Mixtures stat.ME

The nonparametric maximum likelihood estimator (NPMLE) of a Gaussian location mixture maximizes the likelihood over the infinite-dimensional space of mixing distributions. The maximizing mixing distribution can be nonunique, and the classical bound on its number of atoms grows linearly with the sample size $n$. We show that a vanishingly small random perturbation of the likelihood yields exact polylogarithmic sparsity. The resulting randomly reweighted NPMLE maximizes a weighted likelihood whose independent weights, taken to be Gamma in our analysis, concentrate around one as $n$ grows. With high probability, it is unique, has $O\{(\log n/\log\log n)^d+\log n\}$ atoms in dimension $d$, nearly maximizes the ordinary likelihood, and estimates the mixture density at a Hellinger rate that is parametric up to logarithmic factors. This sparsity holds for the estimator itself, not for an approximation of it, and requires no support penalty. The proof rests on an effective-dimension principle for positive kernel mixtures: low-dimensional variation of the fitted values controls the support of every extreme point of the set of maximizers. Numerical illustrations verify that the reweighted NPMLE has Hellinger risk and support size comparable to those of the ordinary NPMLE.

Generalized Engression Models stat.ME

We consider estimating the conditional distribution of a multivariate outcome given covariates when its coordinates may be continuous, binary, categorical, ordinal or rankings, and are conditionally dependent on one another. Different statistical methods have been developed for each outcome type, and most of them target a summary of the conditional distribution, such as the mean of each coordinate, rather than the joint distribution of the outcome vector. We develop generalized engression models, a unified nonparametric distributional regression framework for outcomes of any type. The proposed method builds upon engression, a scoring-rule-based deep generative model, and introduces a data-type-specific link function and a stochastic perturbation that smooths the loss, enabling gradient-based training even with discontinuous links. We establish universal representation results for continuous, discrete and mixed outcomes. In simulations and in two applications, 242 species in a community ecology benchmark and a 17-dimensional mixed-type health outcome, the method matches type-specific models on marginal scores, improves on them on the joint distribution, and matches or exceeds purpose-built state-of-the-art joint species distribution models. Software is available in Python.

Statistical Foundations for a Google Play User-Review Sentiment Index: Signal Fusion, Shrinkage, Distributional Validation, and Dynamic Smoothing stat.ME

We develop a statistically explicit sentiment index for Google Play user reviews and establish the mathematical results supporting its construction. Normalized star ratings and text-sentiment scores are treated as noisy measures of latent review valence and fused by covariance-aware inverse-variance weighting. Review-level estimates are aggregated with bounded helpfulness and recency weights, then shrunk toward a population mean using estimated precision rather than an arbitrary review-count threshold. App-level rating histograms provide a distributional diagnostic for samples returned under different API sort orders; because star ratings are discrete, classical continuous Kolmogorov-Smirnov critical values are not used. A local-level state-space model and the Kalman filter provide a denoised temporal trend. Full proofs cover the BLUE and Gaussian maximum-likelihood result, Gaussian-conjugate shrinkage, the Glivenko-Cantelli and Donsker theorems, count transformations via the delta method, and exact Gaussian Kalman filtering. A worked three-review example shows how textual complaints can materially reduce an apparently perfect star-only score.

Two Conformal Constructions for Adaptive Within-Document AI-Text Screening stat.ME

We study false-alert control when screening for text generated by artificial intelligence (AI). The screening procedure selects document prefixes and detectors from observed evidence and may stop before exhausting its inspection budget. We give two finite-sample constructions under document-level exchangeability between human calibration documents and a new null document, with no restriction on dependence among tokens within a document. Construction A registers a finite family of prefix-detector scores and allocates a false-alert budget across their conformal ranks. A union bound protects any executed subset of that family. Construction B calibrates the complete-path maximum of a development-fixed adaptive policy. Each partial-path maximum is bounded by the complete maximum, so a terminal conformal rank protects early stopping without splitting the error budget. We prove marginal control of any false alert across the permitted inspection path and derive necessary calibration counts for rejection. We also state oracle testing, distribution-shift, and independent-audit bounds with their additional assumptions. Both constructions protect stopping within their specified scope; neither proof constructs an e-process or justifies multiplying conformal ranks. Detection power and computational savings remain questions for empirical evaluation.

Statistical attribute alignment for black-box generative AI via output post-processing stat.ME

Generative AI systems are increasingly used, but aligning their outputs with user requirements poses a continuing challenge. Here, we aim to ensure that the distribution of an attribute of an AI-generated output aligns with a user-specified target. This is motivated by examples such as fairness, where we want to ensure that a protected attribute (e.g., gender, race, or age categories) follows a desired distribution, and synthetic data generation, where we want the generated data to be representative of a target distribution. We study the practically important black-box access setting, where a user can repeatedly query a generative AI model. The goal is to return $m\ge 1$ outputs whose joint attribute distribution is as close as possible to this target. For both exact and approximate alignment, we develop algorithms that minimize the expected number of queries to the generator, and we further demonstrate their optimality as the number of requested outputs $m \rightarrow \infty$. Experiments on text-to-image generation and geocoded persona generation tasks show that our post-processing algorithms improve statistical attribute alignment, complementing prompting-based interventions.

Sufficiently Reduced Distributional Regression stat.ME

We propose Sufficiently Reduced Distributional Regression (SRDR), a generative method that combines conditional distribution estimation with nonlinear sufficient dimension reduction (SDR). It builds on a characterization of sufficiency through strictly proper scoring rules: a dimension reduction is sufficient if and only if predicting the response from the reduced covariates incurs no loss in expected score relative to the full covariates. Sufficient dimension reduction thus becomes a risk minimization problem. SRDR jointly trains a dimension reduction map and a generative prediction model by minimizing the energy score, which can be estimated by sampling without density evaluation or adversarial training. The framework extends to multi-environment data and to classification. We prove that the estimated conditional distributions converge in energy distance to the true ones, which implies that the learned representation is asymptotically sufficient. In simulations and applications to CT slice localization, superconductivity, and digit classification, SRDR recovers low-dimensional sufficient structure and matches or outperforms state-of-the-art nonlinear SDR methods in representation quality and predictive performance.

CVaR anchor regression protects against rare shifts stat.ME

We study prediction in new environments when training data contain rare, large shifts. Anchor regression penalizes the average of the squared mean residual across environments. It protects against shifts in an ellipsoid determined by the second moment of the training shifts. Covering rare shifts may therefore require a large penalty, expanding the ellipsoid in every direction and reducing accuracy on common environments. We propose CVaR anchor regression, which replaces the average of the squared mean residuals with a tail average. Unlike CVaR or GroupDRO applied directly to prediction risks, it does not give environments more weight solely because their noise levels are high. We prove an exact worst-case risk guarantee under a linear structural model that allows for heteroscedastic noise. For discrete environments, decreasing the CVaR tail fraction expands the robustness set from an ellipsoid to a scaled convex hull of the training shifts and their negatives. A separate parameter controls its scale. Examples show how the method can improve protection against rare shifts while retaining accuracy on common environments. We illustrate the method on New York City taxi data.

Beyond the Illusion of Power: Calibrating Quasi-Experiments in Observational IS stat.ME

Information systems (IS) researchers increasingly use quasi-experimental methods such as difference-in-differences (DiD) and instrumental variables (IV) to recover causal effects from observational panel data. Power calculations that justify these designs assume i.i.d. errors, but the deeper problem is what even a cluster-robust calculator cannot see. We report a Monte Carlo study over 9837 parameter conditions (approx 9.8 million datasets) and decompose the planned-versus-achieved power gap. The serial-correlation component is recoverable by an AR(1)-aware calculator when rho is known, and partially when rho must be estimated from short pre-periods, but panel attrition, staggered-adoption bias, and parallel-trends pretesting are captured by no closed-form formula; exogenous attrition alone costs approx 8 to 11 percentage points at the few-hundred-to-thousand sample sizes IS studies use. Treatment-correlated, outcome-dependent attrition instead induces bias, not just power loss. For IV, holding first-stage F fixed, larger N neither raises power nor curbs exclusion bias, though with a fixed instrument more data does sharpen the first stage, so identification rests on instrument strength, not sample size.

Optimal Sequential Annotations for Off-Policy Evaluation stat.ME

Offline reinforcement learning and off-policy evaluation evaluates dynamic treatment rules based on retrospectively collected data prior to deployment. In recent AI applications, state and reward information is recorded as complex text or image, which recent AI advancements such as LLM-as-a-judge can label with unknown bias. Expert annotation may be available but at a higher cost. For example, safety classification via cheap but imperfect classifiers vs. expensive expert review. We show how a limited budget for ground-truth data-annotation can be used via doubly-robust OPE with missing rewards, and we optimize variance-optimal annotation probabilities for sequential off-policy evaluation, where the target policy value is estimated from annotated data. We characterize the optimal annotation probabilities for sequential forward-monotone annotation protocols, and provide a feasible batch-adaptive implementation. Our work is motivated by a collaboration with a homelessness services nonprofit that writes casenotes for individuals over time. Our method can be used to unlock trustworthy inference from casenote data and answer new inferential questions such as: how does expanding outreach effort over time affect progress towards a housing application and improvement in housing placement? In simulations and on two real datasets - casenotes from the nonprofit and human-preference votes from LMArena - we see reductions in RMSE of 34-65% for housing placement and 17-68% for progress towards a housing application at budgets of 40% of full annotation and above, and by 55-62% at every budget on LMArena.

When AI Generates Covariates: Causal Typing and Estimand Drift in Sequential Experiments stat.ME

AI-generated covariates from notes, conversations, images, and wearable streams can change the causal question when their roles are left unspecified. A generated feature may represent a treatment version, pre-action state, history, design variable, mediator, outcome proxy, observation process, or intercurrent event; these roles are not interchangeable. We formulate a causal type discipline for sequential experiments: a versioned representation map, a causal role classifier, a claim-status filter, and an estimand lock. The lock fixes a standardized proximal effect before generated covariates enter the analysis. Under audit correctness and standard identification assumptions, admissible role assignments preserve this estimand. We apply the established conditional-covariance characterization of compression bias to substitution of generated representations for design-relevant states. A standardized decomposition separates compression, conditional-law, and standardization drift. Further results cover mediator adjustment, post-action leakage, marker-intervention conflation, outcome-guided discovery, and state-measurement error. Cluster-level orthogonal estimators distinguish empirical and superpopulation targets under repeated sessions and missing outcomes. Simulations show that refinement helps when it retains design-relevant information, whereas design erasure, leakage, and same-data marker selection can produce bias or undercoverage. The framework places causal semantics and claim status before confirmatory inference with generated representations.

Information Set Emulation: Causal Certificates for AI Derived EHR Features stat.ME

AI and large language models can recover clinically meaningful features from electronic health records (EHRs), but predictive usefulness does not establish admissibility for causal inference. We introduce information set emulation: an AI typed lift attaches source evidence, clinical and recording times, decision-time availability, representation version, proposed causal roles, and unresolved ambiguity to extracted features under a locked target trial. Causal certificates record auditable evidence for those roles. Features with unresolved downstream roles are routed to compatible reporting or separate analyses. Typed evidence defines an observational fiber of causal worlds consistent with the observed law. The locked scalar estimand maps this fiber to a compatible image whose squared Chebyshev radius equals the residual minimax mean squared error when the image is nonempty and compact. This classical identity provides a target-specific measure of information ambiguity. The contribution is its integration with a joint EHR observation map and an auditable certificate architecture. Under explicit exchangeability, positivity, and nuisance-consistency conditions, we give identification and cross-fitted augmented inverse probability weighted estimation, distinguishing empirical and population targets. An EHR compression-drift identity separates the roles of frame presence, treatment assignment, and outcome observation. Artificial simulations and a common-law finite-world example illustrate estimation failures and information-radius reduction. Synthetic Phase 0 notes demonstrate audit diagnostics; a separate role-specific analysis spread illustrates routing and is not an exact fiber radius. All experiments are synthetic. The framework specifies when reconstructed information can support a point claim and when compatible reporting is required.

Causal Discovery via Transformed Low-Rank Quantile Surfaces stat.ME

We propose Low-Rank Quantile Surfaces (LRQS), a bivariate causal model in which, in the causal direction, an unknown monotone transformation of the conditional quantile surface admits a low-rank functional decomposition. LRQS subsumes location-scale noise models and post-nonlinear heteroscedastic noise models, while allowing multiple quantile bases to represent changes beyond location-scale effects. We prove generic identifiability of LRQS: the transformed quantile surface is low rank in the causal direction, whereas reverse representability under the corresponding constraints occurs only for exceptional, fine-tuned cause marginals. We provide a simple-yet-powerful causal score using a nonparametric fitting procedure that alternates between rank-constrained approximation of discretized quantile surfaces and isotonic estimation of the unknown monotone transformation. Experiments on synthetic mechanisms with higher-rank distributional shape variation and strong nonlinear distortions, together with standard bivariate benchmarks, show that LRQS is especially effective when conditional distributional shape or observation distortion goes beyond existing location-scale assumptions.

Conformal Policy Learning with Distribution-Free Safety Guarantees stat.ME

Policy learning aims to determine who should be treated based on individual characteristics. In high-stakes settings such as medicine and public policy where safety is a central concern, improving the average outcomes alone may not be sufficient: decision makers may also seek to protect individuals from harm, in line with the Hippocratic principle of ``do no harm.'' In this paper, we propose \textit{conformal policy learning} (CPL), a policy learning procedure with a new distribution-free safety guarantee that controls the probability of assigning treatment to an individual who would be harmed relative to control. CPL views each treatment decision as testing a hypothesis of counterfactual harm and assigns treatment by thresholding conformal p-values. These p-values use observable proxies and selective calibration to address the challenge that the potential outcomes under comparison are never simultaneously observed. For randomized experiments, under standard exchangeability conditions, CPL provides finite-sample safety guarantee at a user-specified level, without imposing any outcome modeling assumptions. Moreover, when the outcome model is consistently estimated, CPL achieves asymptotically optimal welfare subject to the safety constraint. In observational studies, CPL with learn-then-balance weights achieves doubly robust safety guarantees. We evaluate CPL through extensive simulations and apply it to an empirical study of AI-powered interventions designed to reduce conspiracy beliefs.

Real-time and adaptive anomaly detection algorithm for cyclostationary models stat.ME

This article introduces PeriodicCALM, an effective real-time anomaly detection framework designed for cyclostationary data streams. While classical cyclostationary processes feature periodically time-varying statistical properties, real-world signals often contain recurring impulsive components that conceal abnormal behavior. Existing real-time methods for struggle with these dynamics, frequently misinterpreting phase-dependent variability as non-cyclic anomalies and causing excessive false alarms. To address this, PeriodicCALM incorporates cycle-dependent variability to systematically ignore regular cyclic impulses while accurately isolating genuine anomalies. Operating in real time with continuous retraining capabilities, the method adapts dynamically to evolving signal characteristics. Comparative evaluations against the baseline CALM framework using simulated data demonstrate significant improvements in detection accuracy and training efficiency, alongside a reduction in prediction latency. Furthermore, the practical utility of PeriodicCALM is validated on real-world vibration signals collected from a compressor monitoring system.

Differentially Private Average Treatment Effect Estimation by Propensity Score Blocking stat.ME

Average treatment effect (ATE) estimation in observational studies is a fundamental statistical tool used frequently in social science, medicine, and other fields. These fields often work with sensitive data where privacy protections are important, so a differentially private mechanism for ATE estimation is highly desirable. Here we present two propensity score-based algorithms for ATE estimation on observational data, one improving the inverse probability weighting (IPW) method used in prior work, and the other using blocking on the propensity score (BPS). Both show lower error and less bias than prior work, with the BPS-based algorithm frequently reducing error by 75% or more compared to prior work.

Dynamical Non-compensatory Multidimensional IRT Model Using Variational Approximation stat.ME

Multidimensional item response theory (MIRT) is a statistical test theory that precisely estimates multiple latent skills of learners from the responses in a test. Both compensatory and non-compensatory models have been proposed for MIRT: the former assumes that each skill can complement other skills, whereas the latter assumes they cannot. This non-compensatory assumption is convincing in many tests that measure multiple skills; therefore, applying non-compensatory models to such data is crucial for achieving unbiased and accurate estimation. In contrast to tests, latent skills will change over time in daily learning. To monitor the growth of skills, dynamical extensions of MIRT models have been investigated. However, most of them assumed compensatory models, and a model that can reproduce continuous latent states of skills under the non-compensatory assumption has not been proposed thus far. To enable accurate skill tracing under the non-compensatory assumption, we propose a dynamical extension of non-compensatory MIRT models by combining a linear dynamical system and a non-compensatory model. This results in a complicated posterior of skills, which we approximate with a Gaussian distribution by minimizing the Kullback-Leibler divergence between the approximated posterior and the true posterior. The learning algorithm for the model parameters is derived through Monte Carlo expectation maximization. Simulation studies verify that the proposed method is able to reproduce latent skills accurately, whereas the dynamical compensatory model suffers from significant underestimation errors. Furthermore, experiments on an actual data set demonstrate that our dynamical non-compensatory model can infer practical skill tracing and clarify differences in skill tracing between non-compensatory and compensatory models.

Likelihood-free inference with nuisance parameters through normalizing flows stat.ME

We present a simple decomposition of a neural-network-based normalizing flow that naturally uncovers a pivotal statistic (or something close) in the presence of nuisance parameters, based only on a sample generator from the distribution of interest. We show that the statistic is near-pivotal in the sense of minimum average KL-divergence of its $p$-values versus uniform and we argue that it can be expected to have good power when the dimension of the statistic equals the dimension of the parameter. It is able to incorporate prior knowledge about group invariances such as translation and scale. It can discover the one-sample $t$-test almost exactly, outperforms the Welch test in terms of worst-case size over a constrained variance-ratio range and achieves good calibration on partial biserial correlations, while showing higher power (and being much faster) on small-to-moderate samples than profile likelihood-ratio techniques.

Bayesian Matrix-Valued Graphs for Context-Dependent Multivariate Relationships stat.ME

Many scientific graphs attach several variables to each node, so a single scalar edge weight cannot describe direction-dependent interactions. We model each edge by a symmetric positive-definite (SPD) matrix and infer a posterior over matrix-valued graph geometries, which we call the Bayesian matrix-valued graph (BMVG). We ask how these interactions reconfigure across contexts: how large the change is and which multivariate directions strengthen or weaken. The geodesic distance induced by the affine-invariant Riemannian metric (AIRM) quantifies deformation magnitude and generalized eigenvalues resolve its signed directions.Against fused graphical lasso, Bayesian multiple-GGM, and common principal components, BMVG is competitive on global precision recovery while retaining identifiable matrix-valued edge structure and accurately recovering edge-level deformation directions. In controlled known-truth experiments, it resolves structural change with increasing sample size, including orientation changes that leave ordinary eigenvalues unchanged. In one year of Bay Area weather data, the geometry of 12-hour change reconfigures spatial coupling about as much as whole seasons differ. In TCGA-BRCA, estrogen-receptor (ER)-associated reconfiguration concentrates on specific gene-module pairs and persists under graph-scaffold sparsification and removal of subgroup mean differences. These results establish posterior matrix-valued edge geometry as a unified framework for quantifying and interpreting context-dependent multivariate reconfiguration.

A Closed-Form Estimator and Diagnostic Battery for Anchor-Judge Error Correlation, Under a Single-Common-Factor Model stat.ME

When an external reference set (an anchor) is used to decompose an LLM-judge panel's error into a quality signal and a shared common-mode error, standard practice assumes the anchor is uncontaminated: its error uncorrelated with the judges' shared error. We study when that assumption can be dropped and replaced by an estimate. Under a single-common-factor model, >=2 judges and >=2 anchors point-identify the quality variance, the common-mode variance, and each anchor's contamination correlation rho_k in closed form, with an exact per-anchor-pair failure boundary; a designated clean-anchor estimator, by contrast, reports a contaminated companion anchor as fully clean once its trusted anchor is itself contaminated. Because the single-common-factor assumption is itself untestable, the estimator ships gated behind a calibrated diagnostic battery (judge-covariance dispersion; over-identification; a family-block test from judge metadata, with a family-blocked estimator that removes family-level shared-residual bias exactly), bootstrap confidence intervals with measured coverage, and a weak-identification screen. A proposition maps which violations bias rho_k, in which direction, and which evade detection. For ordinal scores we show an identification hierarchy: with all variables ordinal, rho_k is not identified at any number of anchors; with ordinal judges and >=3 continuous anchors it is, and we give an estimator for that case. On real data the validation is asymmetric, and we say so plainly: the diagnostics are validated in the rejecting direction (both real panels we test are correctly rejected by the model-adequacy pre-test), while the estimator is validated in simulation and stress-tested semi-synthetically under oracle calibration; no real panel has yet passed the pre-test, and the pre-test exists precisely to say so. All results replay offline from shipped, checksummed artifacts.

Aggregate Disambiguation Systems stat.ME

Natural-language tasks can elicit different verdicts from protocol-following evaluators that receive the same declared information. We study aggregate disambiguation systems (ADSs). Given a task and a candidate solution, each evaluator casts a binary vote on whether the solution should be accepted, and the system aggregates the votes of a finite panel. The target is protocol reproducibility relative to an explicitly declared evaluator reference, not semantic truth. We separate fixed finite censuses, probabilistic evaluator populations, and growing-census limits, since their endpoint laws and guarantees are not interchangeable. In the population setting, we use finite samples to estimate how often a finite panel reaches the same decision as the declared evaluator population. We provide a lower confidence bound on the fraction of candidate solutions for which the disagreement probability is at most a chosen tolerance. The calculation accounts separately for sampling candidate solutions and sampling evaluators. The construction permits arbitrary dependence among columns induced by shared evaluator rows and uses exact binomial intervals at the evaluator layer and an exact one-sided binomial inversion at the generator layer. Simulations check the implementation against known population coverages and expose power limitations.

Learning a Size-Weight Frontier for Synthetic-Augmented Inference stat.ME

Synthetic data can improve statistical inference when real data are scarce, but naively treating synthetic samples as real data can introduce bias and lead to unreliable inference. We develop a general framework for synthetic-augmented inference across a population of related tasks. It characterizes synthetic augmentation by the number of synthetic observations and their weight. Central to our framework is a size-weight frontier that specifies, for each weight, the largest synthetic sample size for which all smaller sizes attain the target task-marginal coverage. We estimate this frontier from historical tasks, and establish a finite-sample coverage guarantee simultaneously for all size-weight configurations on or below the estimated frontier. In experiments using large language model responses to augment opinion survey data, our procedure achieves target coverage and substantially narrows confidence intervals.

SAUSS: Stochastic Approximation with Unbiased Simulated Scores for Limited Dependent Variable Models stat.ME

Multinomial choice models allow flexible substitution patterns but become computationally demanding with many alternatives or observations. With a fixed per-observation simulation budget, simulated maximum likelihood introduces simulation bias, while each optimization step requires a full-sample likelihood evaluation. We propose Stochastic Approximation with Unbiased Simulated Scores (SAUSS), an averaged stochastic approximation based on conditionally unbiased mini-batch score estimates. Each iteration uses a fixed mini-batch regardless of sample size. For multinomial probit, accept-reject sampling provides exact conditional draws and unbiased score estimates for any fixed number of accepted draws. Under local conditions, asymptotic theory for the averaged estimator and the partial-sum process of the SAUSS iterates incorporates mini-batch and simulation variability and supports random-scaling and plug-in inference. In simulations and an application, SAUSS gives comparable results in less than 1% of the computation time of simulated maximum likelihood. SAUSS extends to limited dependent variable models with conditional-expectation score representations and exact conditional sampling.

Functional linear regression from sparse to dense designs: a pooling-ridge method and minimax optimality stat.ME

Functional data analysis is an important statistical field that treats data as random functions. In practice, the random functions are often not fully observed but instead measured at discrete times. While simpler problems, such as mean and covariance estimation, have been widely studied for discretely observed data, optimal estimation of linear regression for this data type has remained unsolved for over two decades. To tackle this fundamental challenge, we propose a novel approach, referred to as pooling ridge estimation, which combines the advantages of pooling strategy and RKHS-based method by incorporating the unbiased estimation of operators based on discretely observed measurements from all subjects. This unified estimation framework enables us to achieve minimax optimality in prediction risk in arbitrary sampling schemes ranging from sparse to dense designs, for both scalar-on-function and function-on-function regression models. Such methodological and theoretical advances are obtained for the first time and accurately reveal the influence of discrete sampling. For scalar-on-function regression, the phase transition occurs once, separating the convergence behavior into two distinct regimes. Remarkably, for function-on-function regression, up to three phase transitions may occur, determined by the sampling frequencies of the predictor/response functions. Finally, simulation experiments and two real data examples provide empirical support for the proposed methods.

Controlling for Omitted Variable Bias in Deep Neural Networks stat.ME

Control variables are widely used in statistical modelling to account for omitted variable bias of known confounders. However, they have largely been underexplored in deep learning. This is surprising, given that deep learning models encode image-inferable covariates, such as demographic variables, into their predictions when these covariates are correlated with the outcome---a form of omitted variable bias referred to as 'shortcut learning'. While many existing confound-control or fairness methods try to restrict the correlation of such covariates with model predictions, we show that this fails to correct for omitted variable bias. We therefore propose a control variable approach for deep learning models, based on generalised additive modelling of the effects of model inputs and covariates. As flexible additive models can suffer from concurvity, we introduce an estimation procedure that refits the final layer of a pre-trained network to include covariate effects, using cross-fitting with ridge penalisation. We show how these effects can be orthogonalised with respect to covariates to exclude their mediated effects and that model predictions can be marginalised over the covariate distribution to control for their effect. This yields unbiased, interpretable predictions and offers flexibility to model the desired effects depending on the scientific or fairness objective. We verify our approach using simulated images, and demonstrate consistent estimation of true effects. Existing methods either require more data or fail to recover the true effects. We apply our method to real neuroimaging data with experimentally induced confounding, where it recovers prediction performance to near the level of a model trained on unconfounded data. Code is available at https://github.com/mpff/cocodeel.